Best Pumpkin Cupcakes with Caramel Frosting

Introduction

Is there anything more quintessentially autumn than the warm, spiced aroma of pumpkin baking? That cozy feeling is exactly what I wanted to capture in these irresistible Pumpkin Cupcakes with Caramel Cream Cheese Frosting. They are the perfect little handheld treat that embodies the entire season, and I am so excited to share this recipe with you today.

These Pumpkin Cupcakes with Caramel Cream Cheese Frosting are a dreamy combination of moist, warmly spiced pumpkin cake crowned with a luxuriously smooth frosting. The magic happens because we swirl rich caramel sauce directly into the classic cream cheese base, creating a flavor that is simply unforgettable. This dessert perfectly aligns with our mission of creating spectacular yet approachable bakes, as it uses simple pantry staples for the cake and one clever shortcut for the frosting. While these cupcakes are a stunning centerpiece for any fall gathering, they are also surprisingly straightforward to make, even for beginner bakers. You can easily master this recipe and then explore other seasonal favorites, like our popular Apple Cider Donuts, to complete your autumn dessert table. Furthermore, the moist texture of these cupcakes comes from using pure pumpkin puree, a powerhouse ingredient we also love in our classic Pumpkin Bread recipe.

Why I Love This Recipe

I absolutely adore this recipe because it never fails to impress. The cupcakes are incredibly soft and flavorful, while the caramel cream cheese frosting is the real star of the show. It strikes the most perfect balance between tangy and sweet, and it always reminds me of baking with my family during the holidays. Every single time I make these Pumpkin Cupcakes with Caramel Cream Cheese Frosting, they bring so much joy to everyone who tries them.

Health and Nutrition

Why it’s good for your body

These Pumpkin Cupcakes with Caramel Cream Cheese Frosting offer a surprising nutritional boost because pumpkin puree is the star ingredient. It is packed with vitamin A, which supports your vision and immune system. You also get a good dose of fiber from the pumpkin and any whole wheat flour used, so it aids in digestion and helps you feel satisfied longer. Although the frosting is a sweet treat, the cream cheese provides a small amount of protein and calcium. Therefore, you nourish your body even while enjoying a delicious dessert. The warm spices like cinnamon and nutmeg are not just for flavor since they contain antioxidants that help fight inflammation. Consequently, every bite of these Pumpkin Cupcakes with Caramel Cream Cheese Frosting delivers more than just incredible taste. It provides real, wholesome benefits that your body will appreciate, so you can feel good about serving this treat to your family.

How it fits in a healthy lifestyle

These Pumpkin Cupcakes with Caramel Cream Cheese Frosting can absolutely be part of a balanced diet. The key is mindful enjoyment. Savor one as a satisfying afternoon treat or a planned dessert after a nutritious meal. For specific dietary goals, this recipe is wonderfully adaptable. You can easily use a gluten-free flour blend to make it celiac-friendly. You can also reduce the sugar in the batter slightly because the pumpkin adds natural sweetness. If you are managing your protein intake, consider using a protein powder supplement in the frosting. Ultimately, healthy eating is about consistency and joy, not deprivation. Baking a batch at home allows you to control the ingredients, avoiding unnecessary additives. Pair your cupcake with a source of protein, like a handful of nuts, for a more balanced snack. This approach to meal prep and mindful eating helps you enjoy your favorite flavors without derailing your wellness goals.

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Pumpkin Cupcakes with Caramel Cream Cheese Frosting

Moist, fluffy and tender – these pumpkin cupcakes with caramel cream cheese frosting make for the most delicious fall treat. The cupcakes have a warm pumpkin flavor. Then the caramel cream cheese frosting is creamy, a little tangy and filled with salted caramel sauce.

  • Total Time: 80 mins
  • Yield: 16 cupcakes 1x

Ingredients

Scale
  • 1 1/2 cups all-purpose flour
  • 1 1/2 teaspoons cinnamon
  • 1/4 teaspoon ground ginger
  • 1/8 teaspoon ground nutmeg
  • 1/8 teaspoon ground cloves
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1/4 teaspoon salt
  • 1/3 cup vegetable oil (or canola oil)
  • 3/4 cup white sugar
  • 1/2 cup brown sugar (light or dark)
  • 2 large eggs
  • 2 teaspoons vanilla extract
  • 3/4 cup pure pumpkin puree (NOT pumpkin pie filling)
  • 1/3 cup milk (I used 2%)
  • 1 cup granulated sugar
  • 6 tablespoons unsalted butter (cut into about 6 pieces)
  • 1/2 cup whipping cream
  • 1/2 teaspoon sea salt (or coarse salt)
  • 3/4 cup unsalted butter (softened but still firm)
  • 4 ounces full-fat cream cheese (softened but still firm)
  • 23 cups powdered sugar
  • 1/2 cup salted caramel sauce

Instructions

  1. Preheat the oven to 350F (180C) degrees. Line muffin pans with baking papers. This recipe will make about 14-16 cupcakes in total. So I line 1 pan fully and a few papers in the middle of a second pan.
  2. In a medium-sized bowl whisk together the flour, cinnamon, ginger, nutmeg, cloves, baking powder, baking soda and salt.
  3. In a separate large bowl whisk together the oil, white sugar, brown sugar and eggs until no lumps remain. Then whisk in the pumpkin until smooth.
  4. Whisk about 1/2 of the flour mixture into the pumpkin mixture, followed by milk. Then whisk in the rest of the flour mixture until no lumps remain.
  5. Spoon the batter into the lined muffin tins so that each muffin paper is filled about 2/3 – 3/4 full. You should end up with about 14-16 cupcakes in total. I do not recommend trying to fit all the batter into 12 cupcakes. Otherwise, they can overflow.
  6. Bake in the preheated oven for about 18-20 minutes, or until an inserted toothpick comes out clean.
  7. Cool in the pan for 10-20 minutes, then carefully remove from the pan and continue cooling on a wire rack.
  8. Measure out all of your ingredients first so that they're ready to go.
  9. Add the sugar to a medium saucepan over medium heat.
  10. Heat the sugar while occasionally stirring. It will first form lumps and then melt into a deep amber color.
  11. Once the sugar is completely melted and there are no lumps of sugar, add in the butter while whisking constantly. The mixture will bubble up, so be careful.
  12. Once the butter is fully melted and looks incorporated, turn the burner down to a lower setting and whisk in the cream until incorporated. The sauce should look smooth and even in color.
  13. Remove from the heat and whisk in the salt. Let the caramel cool fully before using it in the frosting.
  14. Beat the butter until smooth.
  15. Then mix in the cream cheese. Stop mixing as soon as its combined.
  16. Beat in 1 cup powdered sugar. Then beat in 1/2 cup of fully cooled salted caramel sauce. (Note that the recipe for salted caramel sauce above will make about 1 cup in total – make sure you don't add it all into the frosting).
  17. Then beat in the rest of the powdered sugar about 1/2 – 1 cup at a time, until the desired sweetness is reached. If needed, beat in 1 tablespoon of cream.
  18. Frost the fully cooled cupcakes either with a knife, or transfer to a piping bag and frost. I used a piping bag and a 1M piping tip.
  19. Optionally, drizzle the top of each cupcake with more caramel sauce.

Notes

Ensure cupcakes are completely cooled before frosting to prevent melting. The caramel sauce recipe makes about 1 cup total – use only 1/2 cup in the frosting. Store cupcakes in the refrigerator due to cream cheese frosting, but bring to room temperature before serving for best texture.

  • Author: Fiona
  • Prep Time: 60 mins
  • Cook Time: 20 mins
  • Method: Dessert
  • Cuisine: American

Nutrition

  • Calories: 377
  • Sugar: 38
  • Sodium: 111
  • Fat: 20
  • Saturated Fat: 13
  • Unsaturated Fat: 6
  • Trans Fat: 1
  • Carbohydrates: 48
  • Fiber: 1
  • Protein: 3
  • Cholesterol: 65

How to Prepare This Dish

Steps and time-saving tips

First, gather all your ingredients to make the process smooth and efficient. Preheat your oven to 350°F and line your muffin tin with cupcake liners. Meanwhile, whisk your dry ingredients—flour, baking soda, spices, and salt—in a medium bowl. In a separate, larger bowl, vigorously mix the pumpkin puree, eggs, oil, and both sugars until the mixture is completely smooth and well-blended. Gradually add your dry ingredients to the wet ingredients, stirring just until you no longer see any flour streaks; be careful not to overmix the batter. For a quick cleanup, use a large cookie scoop to evenly distribute the batter among the liners, filling each about two-thirds full. Bake the Pumpkin Cupcakes with Caramel Cream Cheese Frosting for 18-22 minutes, then let them cool completely on a wire rack before you even think about frosting. While they cool, beat the cream cheese and butter together until light and fluffy, then gradually mix in the powdered sugar and a generous drizzle of caramel sauce. Finally, pipe or spread the frosting onto each cooled cupcake and finish with an extra caramel drizzle.

Mistakes I’ve made and learned from

I have absolutely made my share of mistakes with these Pumpkin Cupcakes with Caramel Cream Cheese Frosting. My biggest error was trying to frost warm cupcakes, which resulted in a complete meltdown of my beautiful frosting into a sad, runny puddle. Now, I always perform the touch test to ensure they are genuinely cool. Another challenge was achieving the perfect frosting consistency; sometimes I added too much caramel sauce too quickly, making it too soft to pipe. I learned to add the caramel slowly and chill the frosting for 10 minutes if needed, a trick I picked up from my guide to perfect frosting consistency. Furthermore, I once overmixed the batter and ended up with dense, tough cupcakes instead of light, fluffy ones. This taught me the gentle art of folding, a skill I detail in my post on avoiding tough baked goods. Learning from these hiccups makes the success so much sweeter.

Cultural Connection and Variations

Where this recipe comes from

Although pumpkin itself is a native North American treasure, the story of our beloved Pumpkin Cupcakes with Caramel Cream Cheese Frosting is a beautiful tale of culinary fusion. Early colonists learned to use pumpkin in pies and puddings from Native Americans, but the cupcake form is a much more modern invention. The real magic happened when the German tradition of spice cakes, rich with cinnamon and nutmeg, met the creamy, tangy frosting preferences popularized by cream cheese, a staple brought by Eastern European immigrants.

This dessert feels inherently American because it weaves together these different threads. In many families, the scent of these spiced cupcakes baking signals the true start of autumn. While some communities might serve a full pie, these individual treats are perfect for potlucks and school parties, offering a personal portion of comfort. The addition of caramel is a stroke of genius, adding a deeply sweet and buttery layer that complements the warm spices perfectly, making Pumpkin Cupcakes with Caramel Cream Cheese Frosting a true celebration of fall.

How it fits in today’s cooking

Pumpkin Cupcakes with Caramel Cream Cheese Frosting remain a superstar of seasonal baking because they perfectly capture the cozy essence of fall in a single, handheld treat. They are a staple at Halloween parties and Thanksgiving feasts, although their appeal is certainly not limited to holidays. Modern home bakers are constantly finding new ways to enjoy this classic, often by adapting it to fit various dietary needs.

You can easily find fantastic gluten-free flour blends that work wonderfully in this spiced batter, ensuring everyone can enjoy a cupcake. For a delightful twist on the frosting, many are now swirling the caramel directly into the cream cheese icing instead of just drizzling it on top, creating a marbled effect and a more intense flavor in every bite. This kind of simple, creative adaptation keeps the recipe fresh and exciting year after year. If you are looking for more ways to use that leftover pumpkin puree, consider whipping up a batch of our Fluffy Pumpkin Pancakes for a festive breakfast. And for another stunning seasonal dessert that uses warm spices, our Perfect Apple Crumble is an absolute crowd-pleaser.

Taste and Texture

What makes it delicious

These Pumpkin Cupcakes with Caramel Cream Cheese Frosting deliver a perfect harmony of warm spice and decadent sweetness. The first sensation is the incredibly tender and moist crumb, because the pumpkin puree and oil work together to create a supremely soft texture. Each bite is fragrant with cinnamon, nutmeg, and ginger, which warmly complements the earthy, sweet pumpkin flavor. The cake itself is rich and dense, although it still feels wonderfully light and airy on your palate. Then comes the frosting, a show-stopping combination of tangy cream cheese and deep, buttery caramel. This creamy topping is luxuriously smooth and silky, so it melts in your mouth against the spiced cake. The overall experience is deeply comforting and autumnal, especially when you get a perfect forkful that includes both the fluffy pumpkin base and the velvety frosting. A final sprinkle of sea salt on top can elevate everything, as it provides a tiny, crisp burst that cuts through the sweetness beautifully. The aroma alone, a mix of baking spices and caramel, will make your entire kitchen smell incredible. Ultimately, these Pumpkin Cupcakes with Caramel Cream Cheese Frosting are a masterclass in fall dessert perfection.

Boosting the flavor

You can easily boost the flavor of your cupcakes with a few simple tweaks. For an even more intense spice profile, try adding a pinch of black pepper or a dash of cardamom to your batter, because these warm spices create a more complex depth. Although the frosting is already a star, you can enhance it by swirling in a spoonful of our homemade salted caramel sauce directly into the mix for extra gooey pockets of flavor. Consider topping your finished creations with a drizzle of that same sauce and a sprinkle of toasted pecans for a delightful crunch. If you want to experiment with the cake itself, you could swap the vegetable oil for browned butter, as it introduces a wonderfully nutty aroma that pairs fantastically with the pumpkin. Another fantastic pairing is a cup of coffee, so be sure to check out our guide on the best coffee for baking to find your perfect match. Even a simple dusting of cinnamon over the frosting just before serving adds a beautiful fragrance and an extra kick of warmth.

Tips for Success

Best practices for results

Always use room temperature cream cheese and butter for your frosting because this ensures a perfectly smooth and lump-free consistency. Furthermore, properly measure your flour by spooning it into the measuring cup and leveling it off with a knife to avoid dense cupcakes. For the best flavor, use high-quality pure pumpkin puree and not pumpkin pie filling, as this will make your Pumpkin Cupcakes with Caramel Cream Cheese Frosting taste authentic. Finally, allow the cupcakes to cool completely on a wire rack before you apply any frosting so that the delicate caramel cream cheese doesn’t melt.

Mistakes to avoid

Avoid overmixing the cupcake batter after you add the dry ingredients, even though it might be tempting to keep stirring, because this will develop too much gluten and lead to a tough crumb. Many bakers also make the error of using cold dairy ingredients, which is a common frosting mistake that causes a grainy texture instead of a silky smooth finish. Although you might be eager to taste them, do not skip the cooling step for your Pumpkin Cupcakes with Caramel Cream Cheese Frosting, as warm cupcakes will cause the frosting to slide right off. Similarly, ensure your caramel sauce is completely cool before blending it into the frosting, otherwise you risk melting the cream cheese and creating a runny mess, much like the issues described in our guide on how to fix runny cupcake frosting.

Serving and Pairing Suggestions

How to serve this dish

For a truly stunning presentation, serve these Pumpkin Cupcakes with Caramel Cream Cheese Frosting on a rustic wooden board or a tiered dessert stand. Moreover, drizzle a little extra caramel sauce over the top of each one just before serving for a glossy, gourmet touch. A sprinkle of toasted pecans or a tiny pinch of flaky sea salt makes a perfect garnish that adds both texture and flavor contrast.

These cupcakes are incredibly versatile for any event. Consequently, they are an essential addition to your holiday dessert table, especially during Thanksgiving and Halloween gatherings. Alternatively, they bring a touch of autumnal warmth to casual weekend brunches, birthday celebrations, or even as a sweet ending to a family dinner.

What goes well with it

A hot cup of spiced chai tea is a fantastic beverage pairing. Specifically, the warm spices in the chai echo the cinnamon and nutmeg in the Pumpkin Cupcakes with Caramel Cream Cheese Frosting, creating a wonderfully cohesive and cozy flavor experience. For a cold option, a glass of our homemade Vanilla Bean Iced Latte provides a smooth, creamy contrast that cuts through the richness beautifully.

If you are serving these as part of a larger dessert spread, consider a lighter fruit-based option on the side. For instance, a scoop of our simple Cinnamon Apple Compote served alongside offers a tart and tender fruit element that wonderfully complements the sweet and spiced notes of the cupcakes.

How to store cupcakes with cream cheese frosting?

You must store any Pumpkin Cupcakes with Caramel Cream Cheese Frosting in the refrigerator because the frosting contains perishable dairy. Place them in a single layer in an airtight container to prevent them from drying out. They will stay fresh for up to 4 days when stored properly.

Can you freeze pumpkin cupcakes?

Yes, you can freeze the unfrosted pumpkin cupcakes for up to 3 months. Wrap them tightly in plastic wrap and then place them in a freezer-safe bag. For the best results, thaw them overnight in the refrigerator and frost them with the caramel cream cheese frosting just before serving.

Why are my pumpkin cupcakes dense?

Dense cupcakes often result from overmixing the batter, which develops too much gluten. To ensure a light and fluffy texture, mix your wet and dry ingredients only until they are just combined. Using fresh baking soda or powder is also crucial for proper rise in these spiced Pumpkin Cupcakes with Caramel Cream Cheese Frosting.

What is the difference between pumpkin pie filling and pumpkin puree?

Pumpkin pie filling is pre-sweetened and flavored with spices, while pumpkin puree is just cooked, mashed pumpkin with nothing else added. For this recipe, you must use 100% pure pumpkin puree to control the sugar and spice levels yourself and achieve the perfect balance for your cupcakes and frosting.

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